New microsatellite markers for population studies of Phytophthora cinnamomi, an important global pathogen.
Identifieur interne : 000959 ( Main/Exploration ); précédent : 000958; suivant : 000960New microsatellite markers for population studies of Phytophthora cinnamomi, an important global pathogen.
Auteurs : J. Engelbrecht [Afrique du Sud] ; T A Duong [Afrique du Sud] ; N V D. Berg [Afrique du Sud]Source :
- Scientific reports [ 2045-2322 ] ; 2017.
Descripteurs français
- KwdFr :
- MESH :
- génétique : Marqueurs génétiques, Phytophthora, Répétitions microsatellites.
- isolement et purification : Phytophthora.
- parasitologie : Maladies des plantes, Persea, Racines de plante.
- Génotype, République d'Afrique du Sud.
- Wicri :
- geographic : Afrique du Sud.
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : Genetic Markers.
- geographic : South Africa.
- genetics : Microsatellite Repeats, Phytophthora.
- isolation & purification : Phytophthora.
- parasitology : Persea, Plant Diseases, Plant Roots.
- Genotype.
Abstract
Phytophthora cinnamomi is the causal agent of root rot, canker and dieback of thousands of plant species around the globe. This oomycete not only causes severe economic losses but also threatens natural ecosystems. In South Africa, P. cinnamomi affects eucalyptus, avocado, macadamia and indigenous fynbos. Despite being one of the most important plant pathogens with a global distribution, little information is available regarding origin, invasion history and population biology. This is partly due to the limited number of molecular markers available for studying P. cinnamomi. Using available genome sequences for three isolates of P. cinnamomi, sixteen polymorphic microsatellite markers were developed as a set of multiplexable markers for both PCR and Gene Scan assays. The application of these markers on P. cinnamomi populations from avocado production areas in South Africa revealed that they were all polymorphic in these populations. The markers developed in this study represent a valuable resource for studying the population biology and movement of P. cinnamomi and will aid in the understanding of the origin and invasion history of this important species.
DOI: 10.1038/s41598-017-17799-9
PubMed: 29247246
PubMed Central: PMC5732169
Affiliations:
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Berg</name><affiliation wicri:level="1"><nlm:affiliation>Department of Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0002, South Africa.</nlm:affiliation><country xml:lang="fr">Afrique du Sud</country><wicri:regionArea>Department of Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0002</wicri:regionArea><wicri:noRegion>0002</wicri:noRegion></affiliation></author></analytic><series><title level="j">Scientific reports</title><idno type="eISSN">2045-2322</idno><imprint><date when="2017" type="published">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Genetic Markers (genetics)</term><term>Genotype (MeSH)</term><term>Microsatellite Repeats (genetics)</term><term>Persea (parasitology)</term><term>Phytophthora (genetics)</term><term>Phytophthora (isolation & purification)</term><term>Plant Diseases (parasitology)</term><term>Plant Roots (parasitology)</term><term>South Africa (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Génotype (MeSH)</term><term>Maladies des plantes (parasitologie)</term><term>Marqueurs génétiques (génétique)</term><term>Persea (parasitologie)</term><term>Phytophthora (génétique)</term><term>Phytophthora (isolement et purification)</term><term>Racines de plante (parasitologie)</term><term>République d'Afrique du Sud (MeSH)</term><term>Répétitions microsatellites (génétique)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Genetic Markers</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>South Africa</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Microsatellite Repeats</term><term>Phytophthora</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Marqueurs génétiques</term><term>Phytophthora</term><term>Répétitions microsatellites</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Phytophthora</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Phytophthora</term></keywords><keywords scheme="MESH" qualifier="parasitologie" xml:lang="fr"><term>Maladies des plantes</term><term>Persea</term><term>Racines de plante</term></keywords><keywords scheme="MESH" qualifier="parasitology" xml:lang="en"><term>Persea</term><term>Plant Diseases</term><term>Plant Roots</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Genotype</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Génotype</term><term>République d'Afrique du Sud</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Afrique du Sud</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Phytophthora cinnamomi is the causal agent of root rot, canker and dieback of thousands of plant species around the globe. This oomycete not only causes severe economic losses but also threatens natural ecosystems. In South Africa, P. cinnamomi affects eucalyptus, avocado, macadamia and indigenous fynbos. Despite being one of the most important plant pathogens with a global distribution, little information is available regarding origin, invasion history and population biology. This is partly due to the limited number of molecular markers available for studying P. cinnamomi. Using available genome sequences for three isolates of P. cinnamomi, sixteen polymorphic microsatellite markers were developed as a set of multiplexable markers for both PCR and Gene Scan assays. The application of these markers on P. cinnamomi populations from avocado production areas in South Africa revealed that they were all polymorphic in these populations. The markers developed in this study represent a valuable resource for studying the population biology and movement of P. cinnamomi and will aid in the understanding of the origin and invasion history of this important species.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">29247246</PMID><DateCompleted><Year>2019</Year><Month>07</Month><Day>16</Day></DateCompleted><DateRevised><Year>2019</Year><Month>07</Month><Day>16</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">2045-2322</ISSN><JournalIssue CitedMedium="Internet"><Volume>7</Volume><Issue>1</Issue><PubDate><Year>2017</Year><Month>12</Month><Day>15</Day></PubDate></JournalIssue><Title>Scientific reports</Title><ISOAbbreviation>Sci Rep</ISOAbbreviation></Journal><ArticleTitle>New microsatellite markers for population studies of Phytophthora cinnamomi, an important global pathogen.</ArticleTitle><Pagination><MedlinePgn>17631</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1038/s41598-017-17799-9</ELocationID><Abstract><AbstractText>Phytophthora cinnamomi is the causal agent of root rot, canker and dieback of thousands of plant species around the globe. This oomycete not only causes severe economic losses but also threatens natural ecosystems. In South Africa, P. cinnamomi affects eucalyptus, avocado, macadamia and indigenous fynbos. Despite being one of the most important plant pathogens with a global distribution, little information is available regarding origin, invasion history and population biology. This is partly due to the limited number of molecular markers available for studying P. cinnamomi. Using available genome sequences for three isolates of P. cinnamomi, sixteen polymorphic microsatellite markers were developed as a set of multiplexable markers for both PCR and Gene Scan assays. The application of these markers on P. cinnamomi populations from avocado production areas in South Africa revealed that they were all polymorphic in these populations. The markers developed in this study represent a valuable resource for studying the population biology and movement of P. cinnamomi and will aid in the understanding of the origin and invasion history of this important species.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Engelbrecht</LastName><ForeName>J</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Department of Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0002, South Africa. 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Engelbrecht</name></noRegion><name sortKey="Berg, N V D" sort="Berg, N V D" uniqKey="Berg N" first="N V D" last="Berg">N V D. Berg</name><name sortKey="Duong, T A" sort="Duong, T A" uniqKey="Duong T" first="T A" last="Duong">T A Duong</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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